STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_1817Glycine betaine/L-proline ABC transporter, ATPase subunit; KEGG: dps:DP0206 probable glycine betaine/L-proline transport ATP-binding protein (ProV); TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase. (412 aa)    
Predicted Functional Partners:
Sfri_1818
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dps:DP0207 probable glycine betaine/L-proline transport system permease protein (ProW).
 0.999
Sfri_1819
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dps:DP0208 probable glycine betaine/L-proline binding protein (ProX).
 
 0.999
Sfri_1820
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dps:DP0208 probable glycine betaine/L-proline binding protein (ProX).
 
 0.999
Sfri_0630
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0754 ABC transporter, ATP-binding protein.
 
     
0.622
Sfri_1293
TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: son:SO1647 glutathione-regulated potassium-efflux system protein KefB, putative; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
     
 0.487
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.