STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_1822Hypothetical protein; KEGG: cps:CPS_1821 acyltransferase family protein. (376 aa)    
Predicted Functional Partners:
Sfri_3505
PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_0981 hypothetical protein.
  
     0.577
Sfri_1382
PFAM: sugar transferase; KEGG: pha:PSHAa1783 UDP-glucose lipid carrier transferase.
     
 0.507
Sfri_1375
TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: hch:HCH_04683 glycosyltransferase; Belongs to the glycosyltransferase 26 family.
  
  
 0.499
Sfri_1376
PFAM: glycosyl transferase, group 1; KEGG: pfo:Pfl_2819 glycosyl transferase, group 1.
  
  
 0.499
Sfri_1385
Conserved hypothetical protein; PFAM: lipopolysaccharide biosynthesis; KEGG: pha:PSHAa1780 exopolysaccharide biosynthesis protein.
     
 0.498
nnrD
Carbohydrate kinase, YjeF related protein; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.
       0.486
Sfri_3116
PFAM: polysaccharide deacetylase; KEGG: cps:CPS_3729 polysaccharide deacetylase family protein.
 
   
 0.442
Sfri_1470
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2742 sensor histidine kinase/response regulator.
  
  
 0.405
Sfri_3395
KEGG: ilo:IL2088 predicted hydrolase of the alpha/beta superfamily.
  
     0.405
Sfri_0747
TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: eca:ECA1964 putative molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
     0.400
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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