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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_1900Transcriptional regulator, DeoR family protein; PFAM: putative sugar-binding domain protein; KEGG: pha:PSHAa1504 transcriptional regulator. (320 aa)    
Predicted Functional Partners:
Sfri_1899
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pha:PSHAb0206 putative unknown enzyme.
 
     0.923
Sfri_1901
KEGG: pha:PSHAb0207 putative nucleoside transport protein.
 
     0.671
Sfri_1903
PFAM: Mannitol dehydrogenase, C-terminal; Mannitol dehydrogenase rossman, N-terminal domain protein; KEGG: pha:PSHAb0208 D-mannonate oxidoreductase.
 
     0.658
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
   
 0.560
Sfri_2960
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pha:PSHAb0228 putative ABC-type transport system, permease component.
  
    0.520
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 2 subfamily.
 
   
 0.494
Sfri_2653
PFAM: PEP-utilizing enzyme; KEGG: pst:PSPTO0954 phosphoenolpyruvate-protein phosphotransferase,EI/HPr/EIIA components.
  
  
 0.477
Sfri_2959
KEGG: pha:PSHAb0229 putative ABC-type transport system, periplasmic component.
  
     0.410
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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