Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Sfri_1925KEGG: vfi:VF0709 hypothetical protein. (91 aa)    
Predicted Functional Partners:
Sfri_1924
TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO2380 RecQ domain protein.
       0.773
Sfri_3136
KEGG: cps:CPS_3694 hypothetical protein.
  
     0.719
Sfri_1622
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2192 sensor histidine kinase.
  
     0.599
Sfri_1779
KEGG: cps:CPS_0256 hypothetical protein.
  
     0.568
Sfri_3612
KEGG: son:SO2181 hypothetical protein.
  
     0.550
Sfri_1923
KEGG: son:SO2381 hypothetical protein.
       0.493
Sfri_3998
PFAM: Dual specificity protein phosphatase; diacylglycerol kinase, catalytic region; KEGG: pha:PSHAb0333 methylglyoxal synthase.
  
     0.481
Sfri_2446
KEGG: son:SO2839 hypothetical protein.
  
     0.454
Sfri_2663
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: son:SO3075 RNA methyltransferase, TrmH family, putative.
  
     0.441
Sfri_3046
PFAM: peptidase M24; KEGG: cps:CPS_1459 metallopeptidase, M24 family; Belongs to the peptidase M24B family.
  
     0.429
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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