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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_1968PFAM: protein of unknown function DUF411; KEGG: par:Psyc_1592 hypothetical protein. (171 aa)    
Predicted Functional Partners:
Sfri_1969
TIGRFAM: Twin-arginine translocation pathway signal; copper-resistance protein, CopA family; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: ppu:PP5380 copper resistance protein A.
 
   
 0.859
Sfri_1970
PFAM: copper resistance B precursor; KEGG: tbd:Tbd_1325 probable copper resistance protein B.
 
   
 0.836
Sfri_0212
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: ilo:IL1218 cation transport ATPase.
 
   
 0.645
Sfri_1972
PFAM: copper resistance D domain protein; KEGG: pha:PSHAb0008 putative copper export protein.
 
     0.627
Sfri_1973
KEGG: pha:PSHAb0007 putative orphan protein.
 
     0.542
Sfri_1971
PFAM: copper resistance protein CopC; KEGG: pha:PSHAb0009 putative copper resistance (CopC-like).
       0.534
Sfri_2015
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: son:SO2359 cation transport ATPase, E1-E2 family.
 
   
 0.502
Sfri_1967
KEGG: pha:PSHAa0302 hypothetical protein.
       0.498
merP
Mercuric transport protein periplasmic component; Involved in mercury resistance. Acts as a mercury scavenger that specifically binds to a mercuric ion in the periplasm and probably passes it to the cytoplasmic mercuric reductase MerA via the mercuric transport protein MerT.
 
   
 0.416
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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