STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_1973KEGG: pha:PSHAb0007 putative orphan protein. (147 aa)    
Predicted Functional Partners:
Sfri_1972
PFAM: copper resistance D domain protein; KEGG: pha:PSHAb0008 putative copper export protein.
 
     0.765
Sfri_1971
PFAM: copper resistance protein CopC; KEGG: pha:PSHAb0009 putative copper resistance (CopC-like).
 
     0.710
Sfri_1970
PFAM: copper resistance B precursor; KEGG: tbd:Tbd_1325 probable copper resistance protein B.
 
     0.609
Sfri_1969
TIGRFAM: Twin-arginine translocation pathway signal; copper-resistance protein, CopA family; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: ppu:PP5380 copper resistance protein A.
 
     0.596
Sfri_1383
KEGG: pha:PSHAa1782 hypothetical protein.
  
     0.574
Sfri_1968
PFAM: protein of unknown function DUF411; KEGG: par:Psyc_1592 hypothetical protein.
 
     0.542
Sfri_2416
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2427 TonB-dependent receptor, putative.
  
     0.494
Sfri_1385
Conserved hypothetical protein; PFAM: lipopolysaccharide biosynthesis; KEGG: pha:PSHAa1780 exopolysaccharide biosynthesis protein.
 
     0.490
Sfri_3725
Transcriptional regulator, LysR family protein; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_4160 substrate-binding transcriptional regulator, LysR family.
  
     0.442
Sfri_1388
PFAM: O-antigen polymerase; KEGG: pha:PSHAa1797 hypothetical protein.
 
     0.427
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.