Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Sfri_1981PFAM: beta-lactamase domain protein; KEGG: ilo:IL1442 Zn-dependent hydrolase, glyoxylase family. (289 aa)    
Predicted Functional Partners:
Sfri_1980
PFAM: protein of unknown function DUF81; KEGG: ttj:TTHA0835 conserved hypothetical membrane protein.
 
   
 0.829
Sfri_1979
PFAM: Rhodanese domain protein; KEGG: ilo:IL1695 rhodanese-related sulfurtransferase.
  
   0.764
Sfri_1982
1-Cys peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
 
    0.681
Sfri_0585
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: vch:VCA0644 NADH oxidase, putative.
  
 0.538
Sfri_1441
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; protein of unknown function DUF882; Peptidase M15A; KEGG: son:SO2110 hypothetical protein.
  
    0.455
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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