STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Sfri_2000PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4061 polysulfide reductase, subunit B. (190 aa)    
Predicted Functional Partners:
Sfri_1999
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO4062 polysulfide reductase, subunit A; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.972
Sfri_2001
PFAM: Polysulphide reductase, NrfD; KEGG: son:SO4060 polysulfide reductase, subunit C.
 
  
 0.958
Sfri_0057
Formate dehydrogenase alpha subunit; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO4509 formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.878
Sfri_3128
TIGRFAM: Twin-arginine translocation pathway signal; anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO1429 anaerobic dimethyl sulfoxide reductase, A subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.874
Sfri_3684
TIGRFAM: Twin-arginine translocation pathway signal; anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO1429 anaerobic dimethyl sulfoxide reductase, A subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.872
Sfri_0059
TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: son:SO4511 formate dehydrogenase, C subunit, putative.
 
 
 0.817
Sfri_1994
trimethylamine-N-oxide reductase TorA; TIGRFAM: Twin-arginine translocation pathway signal; trimethylamine-N-oxide reductase TorA; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: son:SO1232 trimethylamine-N-oxide reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.739
Sfri_2059
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sil:SPO1845 oxidoreductase, molybdopterin-binding; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.642
Sfri_3682
PFAM: cytoplasmic chaperone TorD family protein; KEGG: son:SO1431 hypothetical protein.
 
  
 0.620
napA
Periplasmic nitrate reductase subunit NapA apoprotein; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
  
 
 0.603
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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