Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Sfri_2001PFAM: Polysulphide reductase, NrfD; KEGG: son:SO4060 polysulfide reductase, subunit C. (313 aa)    
Predicted Functional Partners:
Sfri_2000
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4061 polysulfide reductase, subunit B.
 
  
 0.958
Sfri_1999
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO4062 polysulfide reductase, subunit A; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   
 0.915
nrfA
Respiratory nitrite reductase (cytochrome; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
 
  
 0.880
Sfri_0615
Hypothetical protein; KEGG: eca:ECA1876 cytochrome C-type protein.
 
  
 0.858
Sfri_3036
PFAM: cytochrome c552; KEGG: stm:STM4277 nitrite reductase periplasmic cytochrome c552; Belongs to the cytochrome c-552 family.
 
  
 0.728
Sfri_3682
PFAM: cytoplasmic chaperone TorD family protein; KEGG: son:SO1431 hypothetical protein.
 
     0.707
Sfri_0614
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: vfi:VF1552 thiosulfate reductase electron transport subunit.
 
  
 0.699
Sfri_1998
Histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4155 sensor histidine kinase.
 
   
 0.684
Sfri_3126
PFAM: cytoplasmic chaperone TorD family protein; KEGG: son:SO1431 hypothetical protein.
 
     0.671
Sfri_2510
KEGG: son:SO3623 tetraheme cytochrome c.
  
     0.651
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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