STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_2004KEGG: vfi:VF1777 hypothetical protein. (89 aa)    
Predicted Functional Partners:
Sfri_0928
KEGG: son:SO1372 hypothetical protein.
  
     0.444
Sfri_0544
PFAM: Endonuclease I; KEGG: son:SO0833 endonuclease I.
  
     0.432
Sfri_2005
Hypothetical protein.
       0.428
Sfri_3725
Transcriptional regulator, LysR family protein; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_4160 substrate-binding transcriptional regulator, LysR family.
  
     0.406
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.