Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Sfri_2006PFAM: protein of unknown function DUF450; KEGG: ppr:PBPRA1804 putative type I restriction enzyme R protein. (82 aa)    
Predicted Functional Partners:
Sfri_1953
TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: plu:plu4319 type I site-specific deoxyribonuclease HsdM.
 
 
 0.716
Sfri_2608
PFAM: N-6 DNA methylase; KEGG: pha:PSHAa2094 type I restriction-modification system, M subunit; N-6 adenine-specific DNA methylase.
  
 
 0.679
Sfri_1954
PFAM: restriction modification system DNA specificity domain; KEGG: hit:NTHI0315 putative type I restriction-modification system specificity protein.
  
 
 0.648
Sfri_2607
PFAM: restriction modification system DNA specificity domain; KEGG: pha:PSHAa2093 type I restriction-modification system, S subunit.
  
 
 0.602
Sfri_1250
KEGG: son:SO4019 hypothetical protein.
  
    0.485
Sfri_3659
KEGG: pgi:PG1436 ATPase, putative.
  
    0.420
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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