STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_2007PFAM: phage integrase family protein; KEGG: son:SO2370 site-specific recombinase, phage integrase family. (435 aa)    
Predicted Functional Partners:
Sfri_2094
KEGG: son:SO2518 hypothetical protein.
  
    0.590
Sfri_2008
Hypothetical protein.
       0.558
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.485
Sfri_2915
TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; Prephenate dehydrogenase; KEGG: son:SO1362 prephenate dehydrogenase / chorismate mutase.
  
    0.450
Sfri_0243
KEGG: son:SO4625 competence protein ComF.
   
    0.431
Sfri_3156
Glycerophosphoryl diester phosphodiesterase-like protein; KEGG: cpe:CPE1877 probable glycerophosphodiester phosphodiesterase.
  
     0.425
Sfri_2665
PFAM: ATP-NAD/AcoX kinase; KEGG: son:SO3077 hypothetical protein.
  
     0.406
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.