STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_2055KEGG: bpm:BURPS1710b_0124 GDSL-like lipase/acylhydrolase domain protein. (264 aa)    
Predicted Functional Partners:
Sfri_2056
PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC1175 haloalkane dehalogenase, putative.
 
  
 0.603
Sfri_1018
Ig domain protein, group 2 domain protein; Ice-binding adhesion protein that adsorbs this bacterium onto ice to maintain a favorable position in its aquatic habitat. Inhibits growth of the ice crystals. Has high thermal hysteresis (TH) activity, which is the ability to lower the freezing point of an aqueous solution below its melting point. The TH activity of this protein is approximately 1.4 degrees Celsius at 25 uM and little below 2 degrees Celsius at 80 uM.
  
 
 0.544
Sfri_1239
KEGG: hch:HCH_02592 hypothetical protein.
  
 
 0.544
Sfri_2359
Hypothetical protein.
  
 
 0.544
Sfri_2072
PFAM: Phosphoglycerate mutase; KEGG: aci:ACIAD1884 putative phosphoglycerate mutase related protein.
 
   
 0.453
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.