STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_2148KEGG: son:SO2423 hypothetical protein. (105 aa)    
Predicted Functional Partners:
Sfri_2147
PFAM: protein of unknown function DUF1315; KEGG: son:SO2422 hypothetical protein.
 
   
 0.928
Sfri_2149
PFAM: peptidase M14, carboxypeptidase A; KEGG: son:SO2424 zinc carboxypeptidase domain protein.
 
   
 0.796
Sfri_1448
KEGG: son:SO2917 hypothetical protein.
  
     0.770
Sfri_1255
PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1614 acetyltransferase, GNAT family.
  
     0.766
Sfri_3528
KEGG: son:SO0554 hypothetical protein.
  
     0.762
Sfri_2225
PFAM: protein of unknown function DUF1302; KEGG: son:SO2597 hypothetical protein.
  
     0.760
Sfri_2621
SMART: Tetratricopeptide domain protein; KEGG: son:SO1829 TPR domain protein.
  
     0.760
Sfri_2264
KEGG: son:SO2637 hypothetical protein.
  
     0.752
Sfri_2869
KEGG: son:SO3364 hypothetical protein.
  
     0.744
Sfri_1253
KEGG: son:SO1612 hypothetical protein.
  
     0.743
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.