node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sfri_0228 | Sfri_2389 | Sfri_0228 | Sfri_2389 | PFAM: regulatory protein RecX; KEGG: vfi:VFA0909 putative regulatory protein RecX. | TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: son:SO2803 DNA internalization-related competence protein ComEC/Rec2. | 0.492 |
Sfri_0228 | polA | Sfri_0228 | Sfri_3943 | PFAM: regulatory protein RecX; KEGG: vfi:VFA0909 putative regulatory protein RecX. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.500 |
Sfri_0228 | ruvA | Sfri_0228 | Sfri_2181 | PFAM: regulatory protein RecX; KEGG: vfi:VFA0909 putative regulatory protein RecX. | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.490 |
Sfri_0228 | ruvC | Sfri_0228 | Sfri_2182 | PFAM: regulatory protein RecX; KEGG: vfi:VFA0909 putative regulatory protein RecX. | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.672 |
Sfri_0418 | Sfri_2389 | Sfri_0418 | Sfri_2389 | Mg chelatase, subunit ChlI; KEGG: son:SO0349 magnesium chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase. | TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: son:SO2803 DNA internalization-related competence protein ComEC/Rec2. | 0.590 |
Sfri_0418 | ruvC | Sfri_0418 | Sfri_2182 | Mg chelatase, subunit ChlI; KEGG: son:SO0349 magnesium chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase. | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.639 |
Sfri_1795 | Sfri_2389 | Sfri_1795 | Sfri_2389 | DNA translocase FtsK; PFAM: cell divisionFtsK/SpoIIIE; KEGG: son:SO2306 cell division protein FtsK, putative. | TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: son:SO2803 DNA internalization-related competence protein ComEC/Rec2. | 0.608 |
Sfri_1795 | polA | Sfri_1795 | Sfri_3943 | DNA translocase FtsK; PFAM: cell divisionFtsK/SpoIIIE; KEGG: son:SO2306 cell division protein FtsK, putative. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.601 |
Sfri_1795 | ruvA | Sfri_1795 | Sfri_2181 | DNA translocase FtsK; PFAM: cell divisionFtsK/SpoIIIE; KEGG: son:SO2306 cell division protein FtsK, putative. | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.514 |
Sfri_1795 | ruvB | Sfri_1795 | Sfri_2180 | DNA translocase FtsK; PFAM: cell divisionFtsK/SpoIIIE; KEGG: son:SO2306 cell division protein FtsK, putative. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.656 |
Sfri_1795 | ruvC | Sfri_1795 | Sfri_2182 | DNA translocase FtsK; PFAM: cell divisionFtsK/SpoIIIE; KEGG: son:SO2306 cell division protein FtsK, putative. | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.505 |
Sfri_2183 | aspS | Sfri_2183 | Sfri_2184 | PFAM: protein of unknown function DUF28; KEGG: son:SO2432 conserved hypothetical protein TIGR01033. | aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.748 |
Sfri_2183 | ruvA | Sfri_2183 | Sfri_2181 | PFAM: protein of unknown function DUF28; KEGG: son:SO2432 conserved hypothetical protein TIGR01033. | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.844 |
Sfri_2183 | ruvB | Sfri_2183 | Sfri_2180 | PFAM: protein of unknown function DUF28; KEGG: son:SO2432 conserved hypothetical protein TIGR01033. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.781 |
Sfri_2183 | ruvC | Sfri_2183 | Sfri_2182 | PFAM: protein of unknown function DUF28; KEGG: son:SO2432 conserved hypothetical protein TIGR01033. | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.823 |
Sfri_2389 | Sfri_0228 | Sfri_2389 | Sfri_0228 | TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: son:SO2803 DNA internalization-related competence protein ComEC/Rec2. | PFAM: regulatory protein RecX; KEGG: vfi:VFA0909 putative regulatory protein RecX. | 0.492 |
Sfri_2389 | Sfri_0418 | Sfri_2389 | Sfri_0418 | TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: son:SO2803 DNA internalization-related competence protein ComEC/Rec2. | Mg chelatase, subunit ChlI; KEGG: son:SO0349 magnesium chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase. | 0.590 |
Sfri_2389 | Sfri_1795 | Sfri_2389 | Sfri_1795 | TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: son:SO2803 DNA internalization-related competence protein ComEC/Rec2. | DNA translocase FtsK; PFAM: cell divisionFtsK/SpoIIIE; KEGG: son:SO2306 cell division protein FtsK, putative. | 0.608 |
Sfri_2389 | ruvA | Sfri_2389 | Sfri_2181 | TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: son:SO2803 DNA internalization-related competence protein ComEC/Rec2. | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.561 |
Sfri_2389 | ruvB | Sfri_2389 | Sfri_2180 | TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: son:SO2803 DNA internalization-related competence protein ComEC/Rec2. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.500 |