STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_2360PFAM: Rhs element Vgr protein; KEGG: ppr:PBPRA0675 hypothetical protein. (618 aa)    
Predicted Functional Partners:
Sfri_2361
PFAM: protein of unknown function DUF796; KEGG: vpa:VPA1027 hypothetical protein.
 
  
 0.981
Sfri_2374
PFAM: OmpA/MotB domain protein; KEGG: ppr:PBPRA0661 hypothetical protein.
 
  
 0.976
Sfri_2369
PFAM: Uncharacterised conserved protein UCP028301; KEGG: vpa:VPA1035 hypothetical protein.
 
  
 0.967
Sfri_2363
PFAM: protein of unknown function DUF1305; KEGG: vpa:VPA1029 hypothetical protein.
 
  
 0.957
Sfri_2370
PFAM: ImpA domain protein; KEGG: ppr:PBPRA0665 hypothetical protein.
 
  
 0.957
Sfri_2365
PFAM: protein of unknown function DUF1316; KEGG: vvy:VVA0983 hypothetical protein.
 
  
 0.926
Sfri_2358
PFAM: PAAR repeat-containing protein; KEGG: vpa:VPA1025 hypothetical protein.
 
   
 0.921
Sfri_2367
PFAM: protein of unknown function DUF877; KEGG: ppr:PBPRA0668 hypothetical protein.
 
  
 0.905
Sfri_2362
PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: ppr:PBPRA0673 putative ATPase with chaperone activity; Belongs to the ClpA/ClpB family.
 
  
 0.903
Sfri_2368
PFAM: protein of unknown function DUF877; KEGG: ppr:PBPRA0667 hypothetical protein.
 
  
 0.901
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.