STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_2368PFAM: protein of unknown function DUF877; KEGG: ppr:PBPRA0667 hypothetical protein. (497 aa)    
Predicted Functional Partners:
Sfri_2369
PFAM: Uncharacterised conserved protein UCP028301; KEGG: vpa:VPA1035 hypothetical protein.
 
 0.999
Sfri_2374
PFAM: OmpA/MotB domain protein; KEGG: ppr:PBPRA0661 hypothetical protein.
 
  
 0.992
Sfri_2361
PFAM: protein of unknown function DUF796; KEGG: vpa:VPA1027 hypothetical protein.
 
 
 0.987
Sfri_2370
PFAM: ImpA domain protein; KEGG: ppr:PBPRA0665 hypothetical protein.
 
  
 0.964
Sfri_2366
PFAM: virulence protein, SciE type; KEGG: ppr:PBPRA0669 hypothetical protein.
 
    0.956
Sfri_2364
PFAM: protein of unknown function DUF879; KEGG: ppr:PBPRA0671 hypothetical protein.
 
  
 0.954
Sfri_2365
PFAM: protein of unknown function DUF1316; KEGG: vvy:VVA0983 hypothetical protein.
 
  
 0.951
Sfri_2362
PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: ppr:PBPRA0673 putative ATPase with chaperone activity; Belongs to the ClpA/ClpB family.
 
 
 0.940
Sfri_2363
PFAM: protein of unknown function DUF1305; KEGG: vpa:VPA1029 hypothetical protein.
 
  
 0.940
Sfri_2373
PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: ppr:PBPRA0662 hypothetical protein.
 
  
 0.925
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.