STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_2447PFAM: protein of unknown function DUF45; KEGG: son:SO2840 hypothetical protein. (199 aa)    
Predicted Functional Partners:
Sfri_0834
PFAM: protein of unknown function DUF1456; KEGG: son:SO3852 hypothetical protein.
 
    0.534
Sfri_2694
PFAM: YaeQ family protein; KEGG: son:SO3107 hypothetical protein.
 
    0.505
Sfri_2446
KEGG: son:SO2839 hypothetical protein.
       0.500
rlmF
Protein of unknown function DUF890; Specifically methylates the adenine in position 1618 of 23S rRNA.
 
     0.458
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.