STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_2485TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: cps:CPS_3309 putative phosphonate ABC transporter, periplasmic phosphonate-binding protein. (284 aa)    
Predicted Functional Partners:
Sfri_2484
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_3310 putative phosphonate ABC transporter, ATP-binding protein.
 
 
 0.995
Sfri_2483
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cps:CPS_3311 putative phosphonate ABC transporter, permease protein.
 
 
 0.984
Sfri_3121
KEGG: mag:amb1049 ABC-type phosphate/phosphonate transport system.
     
  0.900
selU
tRNA 2-selenouridine synthase; Involved in the post-transcriptional modification of the uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Catalyzes the conversion of 2-thiouridine (S2U-RNA) to 2- selenouridine (Se2U-RNA). Acts in a two-step process involving geranylation of 2-thiouridine (S2U) to S-geranyl-2-thiouridine (geS2U) and subsequent selenation of the latter derivative to 2-selenouridine (Se2U) in the tRNA chain.
 
     0.700
selD
Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
 
     0.591
Sfri_1358
TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1724 phosphate ABC transporter, permease protein, putative.
   
  
 0.479
Sfri_0573
Conserved hypothetical protein; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
   
    0.470
Sfri_3347
Hypothetical protein; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
   
    0.470
Sfri_2486
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO1946 transcriptional regulatory protein PhoP.
  
    0.464
Sfri_2487
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO1945 sensor protein PhoQ.
       0.463
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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