Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Sfri_2575PFAM: protein of unknown function DUF463, YcjX family protein; KEGG: son:SO1810 hypothetical ATPase. (480 aa)    
Predicted Functional Partners:
Sfri_2574
PFAM: conserved hypothetical protein 1620; KEGG: son:SO1811 hypothetical protein.
 
  
 0.996
Sfri_2576
PFAM: PspC domain protein; KEGG: son:SO1809 phage shock protein C.
     
 0.744
Sfri_2577
PFAM: phage shock B family protein; KEGG: son:SO1808 phage shock protein B.
     
 0.744
Sfri_2578
PFAM: PspA/IM30 family protein; KEGG: son:SO1807 phage shock protein A.
     
 0.698
Sfri_2580
PFAM: extracellular solute-binding protein, family 5; KEGG: son:SO1805 peptide ABC transporter, periplasmic peptide-binding protein.
 
     0.531
Sfri_1539
Thioredoxin domain-containing protein; PFAM: Thioredoxin domain; KEGG: son:SO2017 putative thioredoxin-like protein.
  
    0.486
Sfri_2295
KEGG: son:SO2642 hypothetical protein.
  
     0.478
Sfri_2582
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1803 peptide ABC transporter, permease protein.
       0.463
Sfri_2583
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; KEGG: son:SO1802 peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.462
Sfri_2584
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1801 peptide ABC transporter, ATP-binding protein.
       0.461
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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