STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_2575PFAM: protein of unknown function DUF463, YcjX family protein; KEGG: son:SO1810 hypothetical ATPase. (480 aa)    
Predicted Functional Partners:
Sfri_2574
PFAM: conserved hypothetical protein 1620; KEGG: son:SO1811 hypothetical protein.
 
  
 0.993
Sfri_2577
PFAM: phage shock B family protein; KEGG: son:SO1808 phage shock protein B.
     
 0.668
Sfri_2576
PFAM: PspC domain protein; KEGG: son:SO1809 phage shock protein C.
     
 0.667
Sfri_2578
PFAM: PspA/IM30 family protein; KEGG: son:SO1807 phage shock protein A.
     
 0.605
Sfri_2295
KEGG: son:SO2642 hypothetical protein.
  
     0.478
Sfri_1539
Thioredoxin domain-containing protein; PFAM: Thioredoxin domain; KEGG: son:SO2017 putative thioredoxin-like protein.
  
    0.475
Sfri_1330
Transcriptional regulator, TyrR; PFAM: sigma-54 factor, interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: son:SO1669 transcriptional regulatory protein TyrR.
  
  
 0.430
Sfri_2573
TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding, class 1; KEGG: son:SO1813 DNA-binding protein, putative.
       0.423
Sfri_2580
PFAM: extracellular solute-binding protein, family 5; KEGG: son:SO1805 peptide ABC transporter, periplasmic peptide-binding protein.
 
     0.421
Sfri_0585
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: vch:VCA0644 NADH oxidase, putative.
   
    0.407
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.