STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_2643PFAM: Pyridoxal-dependent decarboxylase; KEGG: son:SO1769 glutamate decarboxylase, putative. (546 aa)    
Predicted Functional Partners:
panC
Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
  
 
 0.946
Sfri_3003
TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: son:SO1276 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.895
Sfri_0683
Asparaginase; KEGG: vpa:VPA0374 periplasmic L-asparaginase II; TIGRFAM: L-asparaginases, type II; PFAM: Asparaginase/glutaminase; Belongs to the asparaginase 1 family.
   
 
 0.820
Sfri_2146
TIGRFAM: L-asparaginases, type I; PFAM: Asparaginase/glutaminase; KEGG: son:SO2421 L-asparaginase I.
   
 
 0.820
Sfri_2126
PFAM: aminotransferase, class I and II; KEGG: son:SO2406 aspartate aminotransferase.
   
 
 0.819
argG
PFAM: argininosuccinate synthase; KEGG: son:SO0278 argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
     
 0.817
Sfri_1445
PFAM: peptidase T2, asparaginase 2; KEGG: son:SO2115 asparaginase family protein.
     
 0.817
Sfri_1602
TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; KEGG: son:SO2767 asparagine synthetase B, glutamine-hydrolyzing.
     
 0.812
Sfri_1897
TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: dps:DP1920 hypothetical protein.
    
  0.812
Sfri_0682
TIGRFAM: aspartate ammonia-lyase; PFAM: fumarate lyase; KEGG: vpa:VP2863 aspartate ammonia-lyase.
     
 0.811
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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