STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_2663PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: son:SO3075 RNA methyltransferase, TrmH family, putative. (180 aa)    
Predicted Functional Partners:
Sfri_2665
PFAM: ATP-NAD/AcoX kinase; KEGG: son:SO3077 hypothetical protein.
 
     0.760
Sfri_2664
KEGG: son:SO3076 hypothetical protein.
  
    0.726
Sfri_2666
PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: son:SO3078 major facilitator family protein, putative.
 
     0.622
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
  
    0.539
Sfri_2081
PFAM: protein of unknown function UPF0153; KEGG: cps:CPS_2168 conserved hypothetical protein.
  
     0.524
Sfri_1722
KEGG: sde:Sde_0294 putative transcriptional regulator, fis family.
  
     0.452
prmB
Modification methylase, HemK family protein; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.
     
 0.451
Sfri_3263
PFAM: protein of unknown function DUF350; KEGG: son:SO3762 hypothetical protein.
  
     0.450
Sfri_1925
KEGG: vfi:VF0709 hypothetical protein.
  
     0.441
Sfri_2669
PFAM: Smr protein/MutS2; KEGG: son:SO3081 Smr domain protein.
 
     0.408
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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