STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_2807PFAM: VacJ family lipoprotein; KEGG: son:SO3197 vacJ lipoprotein, putative. (259 aa)    
Predicted Functional Partners:
Sfri_3702
PFAM: Mammalian cell entry related domain protein; KEGG: pca:Pcar_0449 putative ABC transport system substrate-binding protein.
 
   
 0.788
Sfri_3368
PFAM: Mammalian cell entry related domain protein; KEGG: son:SO3952 mce-related protein.
 
   
 0.786
Sfri_3367
PFAM: toluene tolerance family protein; KEGG: son:SO3951 hypothetical protein.
 
 
 
 0.767
Sfri_3701
PFAM: toluene tolerance family protein; KEGG: gme:Gmet_0784 toluene tolerance.
 
 
 
 0.767
Sfri_2806
PFAM: response regulator receiver; KEGG: son:SO3196 response regulator.
       0.637
Sfri_3703
PFAM: protein of unknown function DUF140; KEGG: pca:Pcar_0447 putative ABC transport system permease protein.
 
   
 0.531
Sfri_3369
PFAM: protein of unknown function DUF140; KEGG: son:SO3953 putative membrane protein.
 
   
 0.483
mrdA
Peptidoglycan glycosyltransferase; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
 
     0.433
Sfri_1960
PFAM: Mammalian cell entry related domain protein; KEGG: dde:Dde_1983 putative paraquat-inducible protein B.
  
  
 0.424
Sfri_3737
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
     0.423
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.