STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_2877PFAM: SapC family protein; KEGG: pha:PSHAa1142 hypothetical protein. (233 aa)    
Predicted Functional Partners:
Sfri_1786
PFAM: tryptophan halogenase; KEGG: pha:PSHAa1353 tryptophan halogenase.
 
     0.758
Sfri_1309
Tryptophan halogenase; PFAM: FAD dependent oxidoreductase; tryptophan halogenase; KEGG: sde:Sde_1104 hypothetical protein.
 
     0.756
Sfri_1787
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAa1352 TonB-dependent receptor protein.
 
     0.737
Sfri_1312
PFAM: tryptophan halogenase; KEGG: cps:CPS_3699 putative tryptophan halogenase.
 
     0.718
Sfri_1313
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: xcv:XCV4138 TonB-dependent outer membrane receptor.
 
     0.714
Sfri_1310
SMART: transcription factor jumonji, jmjC domain protein; KEGG: sde:Sde_2829 PASs1-related protein.
 
     0.709
Sfri_2079
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAa2457 TonB-dependent receptor.
 
     0.648
Sfri_3533
TIGRFAM: conserved hypothetical protein; KEGG: son:SO0547 hypothetical protein.
  
     0.579
Sfri_1308
KEGG: sde:Sde_1104 hypothetical protein.
 
     0.520
Sfri_3025
TIGRFAM: conserved hypothetical protein; KEGG: son:SO3502 hypothetical protein.
  
     0.502
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.