STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3000PFAM: protein of unknown function DUF599; KEGG: son:SO3776 hypothetical protein. (240 aa)    
Predicted Functional Partners:
Sfri_3001
PFAM: pseudouridine synthase; KEGG: pha:PSHAa1206 23S rRNA pseudouridylate synthase.
 
     0.605
Sfri_1585
PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: hch:HCH_04860 permease of the major facilitator superfamily.
  
     0.489
Sfri_2999
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; Cache domain protein; KEGG: tdn:Tmden_0836 diguanylate cyclase (GGDEF domain).
       0.452
Sfri_2224
PFAM: protein of unknown function DUF1329; KEGG: son:SO2596 hypothetical protein.
  
     0.438
Sfri_2295
KEGG: son:SO2642 hypothetical protein.
  
     0.413
Sfri_1599
PFAM: protein of unknown function DUF1289; KEGG: son:SO2792 hypothetical protein.
  
     0.400
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.