STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3037PFAM: NnrS family protein; KEGG: vch:VC2330 putative uncharacterized protein involved in response to NO. (403 aa)    
Predicted Functional Partners:
Sfri_3699
PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: ppu:PP0808 flavohemoprotein; Belongs to the globin family.
  
  
 0.808
Sfri_1013
PFAM: peptidase U32; KEGG: son:SO1248 hypothetical peptidase.
 
    0.564
Sfri_0450
Hemerythrin HHE cation binding domain protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.
 
  
 0.559
Sfri_3253
KEGG: rfr:Rfer_1886 putative nitric oxide reductase (subunit B) transmembrane protein.
 
  
 0.540
Sfri_4024
TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: son:SO0045 Rrf2 family protein.
  
  
 0.495
Sfri_3036
PFAM: cytochrome c552; KEGG: stm:STM4277 nitrite reductase periplasmic cytochrome c552; Belongs to the cytochrome c-552 family.
       0.494
Sfri_0621
Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: son:SO3981 nitrate/nitrite sensor protein NarQ.
 
   
 0.474
Sfri_1014
PFAM: peptidase U32; KEGG: son:SO1249 peptidase, U32 family.
 
    0.463
Sfri_1015
KEGG: son:SO1250 hypothetical protein.
 
     0.455
Sfri_3608
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: son:SO1364 iron-sulfur cluster-binding protein.
  
  
 0.449
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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