STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3222PFAM: PepSY-associated TM helix domain protein; KEGG: son:SO0449 hypothetical protein. (529 aa)    
Predicted Functional Partners:
Sfri_3223
KEGG: son:SO0448 hypothetical protein.
 
  
 0.968
Sfri_3224
KEGG: son:SO0447 hypothetical protein.
       0.773
Sfri_3225
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: bpa:BPP0079 ferric siderophore receptor.
 
  
 0.711
Sfri_2549
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_2724 FhuE receptor.
 
  
 0.661
Sfri_3717
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_2724 FhuE receptor.
 
  
 0.558
Sfri_0611
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpa:RPA3480 putative outer membrane receptor for iron transport.
 
  
 0.529
Sfri_1971
PFAM: copper resistance protein CopC; KEGG: pha:PSHAb0009 putative copper resistance (CopC-like).
  
    0.507
Sfri_3025
TIGRFAM: conserved hypothetical protein; KEGG: son:SO3502 hypothetical protein.
  
     0.433
Sfri_3533
TIGRFAM: conserved hypothetical protein; KEGG: son:SO0547 hypothetical protein.
  
     0.410
Sfri_2202
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4077 TonB-dependent receptor, putative.
 
   
 0.406
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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