STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3225TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: bpa:BPP0079 ferric siderophore receptor. (715 aa)    
Predicted Functional Partners:
Sfri_3222
PFAM: PepSY-associated TM helix domain protein; KEGG: son:SO0449 hypothetical protein.
 
  
 0.711
Sfri_0204
PFAM: PepSY-associated TM helix domain protein; KEGG: pfo:Pfl_0927 aspartate kinase.
 
  
 0.635
Sfri_3176
KEGG: son:SO0150 lipoprotein, putative.
  
 
 0.603
Sfri_3223
KEGG: son:SO0448 hypothetical protein.
 
    0.560
Sfri_0612
PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: aci:ACIAD0531 putative hydroxylase.
 
    0.548
Sfri_2160
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ilo:IL2271 outer membrane protein.
  
  
 0.504
Sfri_2622
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.463
Sfri_3224
KEGG: son:SO0447 hypothetical protein.
       0.452
Sfri_2270
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: son:SO4043 TonB domain protein.
 
 
 0.442
menF
Isochorismate synthases; Catalyzes the conversion of chorismate to isochorismate.
   
  
 0.435
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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