STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3249PFAM: Sel1 domain protein repeat-containing protein; KEGG: cps:CPS_1747 hypothetical protein. (289 aa)    
Predicted Functional Partners:
Sfri_1093
PFAM: Sel1 domain protein repeat-containing protein; KEGG: hhe:HH1827 hypothetical protein.
  
     0.768
Sfri_3291
PFAM: Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; KEGG: son:SO0625 hypothetical protein.
  
     0.761
Sfri_0289
PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO4559 hypothetical protein.
  
     0.588
Sfri_3250
KEGG: son:SO4050 hypothetical protein.
       0.428
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.