STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3256PFAM: protein of unknown function DUF583; KEGG: son:SO1662 hypothetical Ccm2-related protein. (265 aa)    
Predicted Functional Partners:
Sfri_2636
KEGG: son:SO1779 decaheme cytochrome c.
 
     0.609
Sfri_0913
KEGG: son:SO1659 decaheme cytochrome c.
  
     0.591
Sfri_3257
PFAM: AFG1-family ATPase; KEGG: son:SO3756 hypothetical ATPase.
       0.544
Sfri_3129
KEGG: son:SO1428 outer membrane protein.
  
     0.486
Sfri_3685
KEGG: son:SO1428 outer membrane protein.
  
     0.482
Sfri_2446
KEGG: son:SO2839 hypothetical protein.
  
     0.466
Sfri_0053
KEGG: son:SO4505 hypothetical protein.
  
     0.462
Sfri_3633
KEGG: son:SO0939 cytochrome c, putative.
  
     0.431
Sfri_0617
PFAM: regulatory protein, LysR; KEGG: son:SO4571 transcriptional regulator, LysR family.
  
     0.415
Sfri_1699
PFAM: S-adenosylmethionine decarboxylase; KEGG: son:SO1871 S-adenosylmethionine decarboxylase proenzyme, putative.
  
     0.405
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.