STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3263PFAM: protein of unknown function DUF350; KEGG: son:SO3762 hypothetical protein. (299 aa)    
Predicted Functional Partners:
Sfri_3262
KEGG: son:SO3761 hypothetical protein.
 
     0.942
speE
Spermine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
     0.934
Sfri_3265
KEGG: son:SO3764 hypothetical protein.
 
     0.889
Sfri_3266
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: son:SO3765 hypothetical protein.
 
     0.883
Sfri_3268
KEGG: son:SO3767 hypothetical protein.
 
     0.863
Sfri_3525
KEGG: son:SO0556 hypothetical protein.
  
     0.728
Sfri_1323
KEGG: son:SO1658 hypothetical protein.
  
     0.723
Sfri_3647
PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: son:SO0733 cold shock domain family protein.
   
    0.719
Sfri_2398
KEGG: son:SO2256 hypothetical protein.
  
     0.687
Sfri_1730
KEGG: son:SO2584 hypothetical protein.
  
     0.657
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.