STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3291PFAM: Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; KEGG: son:SO0625 hypothetical protein. (259 aa)    
Predicted Functional Partners:
Sfri_3249
PFAM: Sel1 domain protein repeat-containing protein; KEGG: cps:CPS_1747 hypothetical protein.
  
     0.761
Sfri_1093
PFAM: Sel1 domain protein repeat-containing protein; KEGG: hhe:HH1827 hypothetical protein.
  
     0.717
Sfri_0289
PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO4559 hypothetical protein.
  
     0.713
Sfri_1589
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: son:SO2183 hypothetical protein.
      
 0.619
Sfri_3501
KEGG: son:SO0578 hypothetical protein.
      
 0.617
Sfri_3877
TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: son:SO4702 glutathione reductase.
    
 
 0.609
Sfri_2242
Aminodeoxychorismate lyase apoprotein; PFAM: aminotransferase, class IV; KEGG: son:SO2615 4-amino-4-deoxychorismate lyase.
      
 0.604
Sfri_0612
PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: aci:ACIAD0531 putative hydroxylase.
  
    0.522
Sfri_0187
KEGG: son:SO1096 hypothetical protein.
  
     0.467
Sfri_1394
AAA ATPase containing von Willebrand factor type A (vWA) domain-like protein; KEGG: son:SO3069 putative membrane protein.
  
    0.432
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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