STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3301PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: son:SO0614 dipeptidyl peptidase IV, putative. (829 aa)    
Predicted Functional Partners:
Sfri_2778
PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: son:SO1539 hypothetical protein.
  
     0.690
Sfri_3528
KEGG: son:SO0554 hypothetical protein.
  
     0.667
Sfri_2777
KEGG: son:SO1548 hypothetical protein.
  
     0.648
Sfri_1604
PFAM: peptidase M28; KEGG: son:SO2766 hypothetical protein.
  
    0.639
Sfri_1253
KEGG: son:SO1612 hypothetical protein.
  
     0.632
Sfri_2488
PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO1944 hypothetical protein.
  
     0.631
Sfri_1287
PFAM: peptidase M28; KEGG: son:SO2198 hypothetical aminopeptidase.
  
    0.630
Sfri_3501
KEGG: son:SO0578 hypothetical protein.
  
     0.624
Sfri_0897
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO3694 HlyD family secretion protein.
  
     0.618
Sfri_2264
KEGG: son:SO2637 hypothetical protein.
  
     0.618
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.