STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3307Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (196 aa)    
Predicted Functional Partners:
Sfri_3305
PFAM: cytochrome c1; KEGG: son:SO0610 ubiquinol-cytochrome c reductase cytochrome c1 subunit.
 
 0.999
Sfri_3306
Cytochrome b/b6, N-terminal domain protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
 0.999
Sfri_0258
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 0.998
Sfri_0255
PFAM: cytochrome c oxidase, subunit III; KEGG: son:SO4609 cytochrome c oxidase subunit III.
 
 0.987
Sfri_2013
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
 0.979
Sfri_0303
PFAM: peptidase M16 domain protein; KEGG: son:SO4537.2 hypothetical Zn-dependent peptidase.
   
 0.975
Sfri_0304
PFAM: peptidase M16 domain protein; KEGG: ppr:PBPRB1337 hypothetical protein.
   
 0.975
Sfri_1071
PFAM: peptidase M16 domain protein; KEGG: son:SO3560 peptidase, M16 family.
   
 0.975
Sfri_0257
Cytochrome-c oxidase; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
  
 0.970
Sfri_0222
PFAM: cytochrome c oxidase, subunit III; KEGG: pha:PSHAa2229 cytochrome o ubiquinol oxidase subunit III (ubiquinol oxidase chain C).
  
 
 0.967
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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