Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3333KEGG: son:SO3905 hypothetical protein. (244 aa)    
Predicted Functional Partners:
Sfri_3335
PFAM: protein of unknown function DUF461; KEGG: son:SO3907 hypothetical protein.
 
    0.852
Sfri_3334
KEGG: son:SO3906 hypothetical protein.
       0.832
Sfri_1527
KEGG: son:SO2714 hypothetical protein.
  
     0.714
Sfri_2148
KEGG: son:SO2423 hypothetical protein.
  
     0.665
Sfri_3948
KEGG: son:SO4729 hypothetical protein.
  
     0.662
Sfri_2869
KEGG: son:SO3364 hypothetical protein.
  
     0.650
Sfri_2621
SMART: Tetratricopeptide domain protein; KEGG: son:SO1829 TPR domain protein.
  
    0.637
Sfri_2398
KEGG: son:SO2256 hypothetical protein.
  
     0.610
Sfri_2400
KEGG: son:SO2254 hypothetical protein.
  
     0.604
Sfri_2658
KEGG: son:SO1854 hypothetical protein.
  
     0.600
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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