STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3370PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3954 ABC transporter, ATP-binding protein, putative. (274 aa)    
Predicted Functional Partners:
Sfri_3369
PFAM: protein of unknown function DUF140; KEGG: son:SO3953 putative membrane protein.
 
 0.998
Sfri_3368
PFAM: Mammalian cell entry related domain protein; KEGG: son:SO3952 mce-related protein.
 
 0.996
Sfri_3703
PFAM: protein of unknown function DUF140; KEGG: pca:Pcar_0447 putative ABC transport system permease protein.
 0.992
Sfri_1962
PFAM: protein of unknown function DUF140; KEGG: dde:Dde_1985 ABC transporter permease protein.
 
 0.988
Sfri_3702
PFAM: Mammalian cell entry related domain protein; KEGG: pca:Pcar_0449 putative ABC transport system substrate-binding protein.
 
 0.985
Sfri_3367
PFAM: toluene tolerance family protein; KEGG: son:SO3951 hypothetical protein.
 
 
 0.953
Sfri_3366
KEGG: son:SO3950 SpoIIAA family protein.
  
 0.952
Sfri_1961
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1984 ATPase.
  
  
 
0.914
Sfri_3704
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb0331 ABC-type transport system.
  
  
 
0.910
Sfri_2583
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; KEGG: son:SO1802 peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
    
0.900
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.