STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3401PFAM: protein of unknown function DUF107; KEGG: son:SO4130 hypothetical protein. (153 aa)    
Predicted Functional Partners:
Sfri_3400
PFAM: band 7 protein; KEGG: son:SO4129 SPFH domain/Band 7 family protein.
 
  
 0.944
Sfri_3399
PFAM: band 7 protein; KEGG: son:SO4128 SPFH domain/Band 7 family protein.
 
  
 0.943
cobS
Cobalamin-5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
   
    0.782
Sfri_3623
PFAM: protein of unknown function DUF1449; KEGG: son:SO1376 hypothetical protein.
 
  
 0.723
Sfri_3622
PFAM: band 7 protein; KEGG: son:SO1377 hypothetical protein.
  
  
 0.659
Sfri_2658
KEGG: son:SO1854 hypothetical protein.
  
     0.627
Sfri_0187
KEGG: son:SO1096 hypothetical protein.
  
     0.619
Sfri_0359
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO0353 TPR domain protein.
  
     0.569
Sfri_0824
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO0815 TonB-dependent receptor C-terminal domain protein.
  
     0.556
Sfri_3300
KEGG: son:SO0615 hypothetical protein.
  
     0.532
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.