STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3402KEGG: son:SO4131 hypothetical protein. (250 aa)    
Predicted Functional Partners:
Sfri_2658
KEGG: son:SO1854 hypothetical protein.
  
     0.620
Sfri_2456
PFAM: protein of unknown function DUF1260; KEGG: son:SO1836 hypothetical protein.
  
     0.604
Sfri_1871
KEGG: son:SO2533 hypothetical protein.
  
     0.570
Sfri_0913
KEGG: son:SO1659 decaheme cytochrome c.
  
     0.515
Sfri_1448
KEGG: son:SO2917 hypothetical protein.
  
     0.513
Sfri_2636
KEGG: son:SO1779 decaheme cytochrome c.
  
     0.509
Sfri_3685
KEGG: son:SO1428 outer membrane protein.
  
   
 0.496
Sfri_3129
KEGG: son:SO1428 outer membrane protein.
  
   
 0.495
Sfri_0738
TIGRFAM: uncharacterized domain; PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: cps:CPS_1756 hypothetical protein.
  
     0.472
Sfri_3599
KEGG: son:SO1504 hypothetical protein.
  
     0.437
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.