STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3444PFAM: phage integrase family protein; KEGG: psp:PSPPH_1149 site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family. (377 aa)    
Predicted Functional Partners:
Sfri_3442
PFAM: phage integrase family protein; KEGG: pst:PSPTO3615 site-specific recombinase, phage integrase family.
     
 0.780
Sfri_3443
KEGG: psp:PSPPH_1148 hypothetical protein.
       0.778
Sfri_3441
KEGG: psp:PSPPH_1146 TetR family transcriptional regulator-like protein.
       0.775
xerC
Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
 
 
 0.754
Sfri_2094
KEGG: son:SO2518 hypothetical protein.
  
    0.498
Sfri_2079
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAa2457 TonB-dependent receptor.
  
     0.490
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.485
Sfri_1250
KEGG: son:SO4019 hypothetical protein.
  
     0.450
Sfri_2915
TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; Prephenate dehydrogenase; KEGG: son:SO1362 prephenate dehydrogenase / chorismate mutase.
  
    0.450
Sfri_2075
KEGG: son:SO4042 hydratase/decarboxylase family protein.
  
     0.440
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.