STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3479KEGG: xac:XAC2430 Tn5044 transposase. (156 aa)    
Predicted Functional Partners:
Sfri_3469
PFAM: transposase Tn3 family protein; KEGG: reu:Reut_D6457 transposase Tn3.
 
     0.881
Sfri_3465
PFAM: transposase Tn3 family protein; KEGG: sec:SC008 transposase.
 
     0.628
Sfri_3477
PFAM: Resolvase, N-terminal domain protein; KEGG: son:SOA0086 site-specific recombinase, resolvase family.
 
   
 0.473
Sfri_3478
PFAM: sulfatase; protein of unknown function DUF1705; KEGG: son:SO2048 membrane protein, putative.
       0.426
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.