STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3539PFAM: ABC-2 type transporter; KEGG: ppr:PBPRA2311 putative transmembrane protein. (369 aa)    
Predicted Functional Partners:
Sfri_3538
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRA2312 putative ABC-type multidrug transport system, ATPase component.
  
 0.992
Sfri_3537
KEGG: ppr:PBPRA2313 hypothetical membrane protein.
 
  
 0.949
Sfri_1560
PFAM: secretion protein HlyD family protein; KEGG: hch:HCH_01961 membrane-fusion protein.
 
  
 0.776
Sfri_3978
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0070 ATP-binding transport protein NatA.
     0.765
Sfri_3729
PFAM: secretion protein HlyD family protein; KEGG: son:SO4089 HlyD family secretion protein.
 
  
 0.756
Sfri_3232
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3802 ABC transporter, ATP-binding protein.
 
  
 0.670
Sfri_1694
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1865 ABC transporter, ATP-binding protein.
 
  
 0.595
Sfri_3376
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3960 ABC transporter, ATP-binding protein.
   
  0.583
Sfri_1562
PFAM: ABC-2 type transporter; KEGG: sec:SC3514 putative ABC superfamily (atp_bind/membrane) transport protein.
 
  
 
0.563
Sfri_0738
TIGRFAM: uncharacterized domain; PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: cps:CPS_1756 hypothetical protein.
  
  
 0.542
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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