STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3590KEGG: son:SO0515 hypothetical protein. (58 aa)    
Predicted Functional Partners:
Sfri_3589
KEGG: son:SO0516 hypothetical protein.
       0.634
Sfri_3190
KEGG: son:SO3733 hypothetical protein.
  
     0.572
Sfri_1553
KEGG: son:SO4533 ISSod10, transposase OrfA.
  
     0.567
Sfri_3591
KEGG: son:SO0514 hypothetical protein.
       0.473
Sfri_3793
KEGG: son:SO4533 ISSod10, transposase OrfA.
  
     0.442
Sfri_1363
PFAM: protein of unknown function DUF1289; KEGG: son:SO1739 hypothetical protein.
  
     0.440
Sfri_3587
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO0519 cation efflux protein, putative; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.436
Sfri_3588
Hypothetical protein.
       0.436
Sfri_1558
KEGG: son:SO4533 ISSod10, transposase OrfA.
  
     0.435
Sfri_0130
KEGG: son:SO4533 ISSod10, transposase OrfA.
  
     0.432
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.