STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3701PFAM: toluene tolerance family protein; KEGG: gme:Gmet_0784 toluene tolerance. (191 aa)    
Predicted Functional Partners:
Sfri_3702
PFAM: Mammalian cell entry related domain protein; KEGG: pca:Pcar_0449 putative ABC transport system substrate-binding protein.
 
 0.994
Sfri_3703
PFAM: protein of unknown function DUF140; KEGG: pca:Pcar_0447 putative ABC transport system permease protein.
 
 
 0.975
Sfri_3368
PFAM: Mammalian cell entry related domain protein; KEGG: son:SO3952 mce-related protein.
 
 0.969
Sfri_3704
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb0331 ABC-type transport system.
  
 
 0.958
Sfri_3707
PFAM: VacJ family lipoprotein; KEGG: ilo:IL1097 surface lipoprotein.
 
 
 
 0.943
Sfri_3367
PFAM: toluene tolerance family protein; KEGG: son:SO3951 hypothetical protein.
  
  
 
0.917
Sfri_3366
KEGG: son:SO3950 SpoIIAA family protein.
  
 
 0.914
Sfri_3369
PFAM: protein of unknown function DUF140; KEGG: son:SO3953 putative membrane protein.
 
 
 0.878
Sfri_1961
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1984 ATPase.
 
 
 0.867
Sfri_1962
PFAM: protein of unknown function DUF140; KEGG: dde:Dde_1985 ABC transporter permease protein.
 
 
 0.862
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.