STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3753KEGG: son:SO4114 MSHA biogenesis protein MshJ. (218 aa)    
Predicted Functional Partners:
Sfri_3751
TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; Secretin domain protein; Secretin/TonB, short N-terminal domain protein; KEGG: son:SO4112 MSHA biogenesis protein MshL.
 
  
 0.951
Sfri_3754
KEGG: vch:VC0399 MSHA biogenesis protein MshI.
 
   
 0.943
Sfri_0113
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.928
Sfri_3755
KEGG: son:SO4114.2 hypothetical biogenesis protein MshI.
 
     0.908
Sfri_3744
PFAM: methylation site containing protein; KEGG: son:SO4105 MSHA pilin protein MshA.
 
   
 0.894
Sfri_3741
PFAM: methylation site containing protein; KEGG: son:SO4102 MSHA biogenesis protein MshO.
 
   
 0.887
Sfri_3749
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO4110 MSHA biogenesis protein MshN, putative.
 
     0.886
Sfri_3745
PFAM: methylation site containing protein; KEGG: son:SO4106 MSHA pilin protein MshB.
 
   
 0.844
Sfri_3742
PFAM: methylation site containing protein; KEGG: son:SO4103 MSHA pilin protein MshD.
 
   
 0.825
Sfri_3750
KEGG: son:SO4111 MSHA biogenesis protein MshM.
 
    0.822
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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