STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3969KEGG: son:SO0079 hypothetical protein. (85 aa)    
Predicted Functional Partners:
Sfri_0780
PFAM: NAD-dependent epimerase/dehydratase; KEGG: son:SO0768 putative NADH-flavin reductase.
   
    0.692
Sfri_3968
PFAM: thioesterase superfamily protein; KEGG: son:SO0080 hypothetical 4-hydroxybenzoyl-CoA thioesterase.
  
    0.603
Sfri_2559
TIGRFAM: conserved hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal; domain of unknown function DUF1731; KEGG: son:SO2922 hypothetical protein.
  
    0.602
rpiA
Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
  
    0.565
Sfri_0073
PFAM: iron-containing alcohol dehydrogenase; KEGG: cac:CAC3392 NADH-dependent butanol dehydrogenase.
   
    0.497
Sfri_2033
PFAM: iron-containing alcohol dehydrogenase; KEGG: alcohol dehydrogenase, iron-containing.
   
    0.497
Sfri_1008
KEGG: son:SO1224 hypothetical protein.
  
    0.424
Sfri_3967
KEGG: son:SO2207 hypothetical protein.
       0.408
Sfri_0854
PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_1258 putative MFS transporter family protein.
   
  
 0.406
Sfri_0914
PFAM: major facilitator superfamily MFS_1; KEGG: son:SO1505 transporter, putative.
   
  
 0.406
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.