STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3979PFAM: ABC-2 type transporter; KEGG: son:SO0069 transport protein, putative. (377 aa)    
Predicted Functional Partners:
Sfri_3978
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0070 ATP-binding transport protein NatA.
 
 
 0.992
Sfri_3977
TAP domain protein; PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: son:SO0071 hydrolase, alpha/beta hydrolase fold family.
 
     0.948
Sfri_3976
PFAM: regulatory protein GntR, HTH; KEGG: son:SO0072 transcriptional regulator, GntR family.
 
     0.643
Sfri_2488
PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO1944 hypothetical protein.
  
     0.622
Sfri_3975
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0073 ABC transporter, ATP-binding protein.
 
  
 0.613
Sfri_0355
KEGG: son:SO4365 hypothetical protein.
  
     0.548
Sfri_2977
KEGG: son:SO1303 hypothetical protein.
  
     0.508
Sfri_2658
KEGG: son:SO1854 hypothetical protein.
  
     0.497
Sfri_3300
KEGG: son:SO0615 hypothetical protein.
  
     0.493
Sfri_3980
KEGG: son:SO0068 hypothetical protein.
       0.473
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.