STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_3992PFAM: NLP/P60 protein; KEGG: son:SO0061 lipoprotein, NLP/P60 family. (196 aa)    
Predicted Functional Partners:
Sfri_3993
PFAM: regulatory protein, TetR; KEGG: nmu:Nmul_A1967 transcriptional regulator, TetR family.
       0.594
Sfri_3314
N-acetylmuramoyl-L-alanine amidase; PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: son:SO0600 N-acetylmuramoyl-L-alanine amidase.
 
  
 0.570
Sfri_2450
PFAM: peptidase M23B; Opacity-associated protein A; KEGG: son:SO2842 peptidase, M23/M37 family.
 
  
 0.511
Sfri_2313
TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: son:SO1994 membrane-bound lytic transglycolase-related protein.
     
 0.497
Sfri_3991
Transcriptional regulator, LacI family; PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: hch:HCH_04796 transcriptional regulator.
       0.485
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
 
   
 0.455
Sfri_2914
KEGG: son:SO1365 hypothetical protein.
   
    0.450
Sfri_2972
PFAM: peptidase M23B; KEGG: son:SO1314 peptidase, M23/M37 family.
  
  
 0.441
Sfri_2795
PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: son:SO1502 cobalamin synthesis protein/P47K family protein.
 
      0.404
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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