STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EU78_01735Dimethylaniline monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (493 aa)    
Predicted Functional Partners:
EU78_05955
30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.671
EU78_01740
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.668
EU78_01730
Cutinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.631
EU78_01745
Precorrin 6A synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.601
EU78_01750
Cobalamin biosynthesis protein CobQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.601
EU78_01755
cobalt-precorrin-6X reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.601
EU78_01760
Cobinamide phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.601
EU78_08110
NADH:flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.584
EU78_19595
ATP synthase F0F1 subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.562
EU78_10075
30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.533
Your Current Organism:
Mycolicibacterium rufum
NCBI taxonomy Id: 318424
Other names: CIP 109273, JCM 16372, M. rufum, Mycobacterium rufum, Mycobacterium rufum Hennessee et al. 2009, Mycobacterium sp. JS14, Mycolicibacterium rufum (Hennessee et al. 2009) Gupta et al. 2018, strain JS14
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