STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EU78_07015ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)    
Predicted Functional Partners:
EU78_07010
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.987
EU78_13425
Antibiotic ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.860
EU78_21340
Glutamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.827
EU78_19585
ATP F0F1 synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.817
EU78_21810
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.806
EU78_19595
ATP synthase F0F1 subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.804
EU78_14030
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.787
EU78_07020
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.786
EU78_07005
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.777
EU78_07025
Halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.777
Your Current Organism:
Mycolicibacterium rufum
NCBI taxonomy Id: 318424
Other names: CIP 109273, JCM 16372, M. rufum, Mycobacterium rufum, Mycobacterium rufum Hennessee et al. 2009, Mycobacterium sp. JS14, Mycolicibacterium rufum (Hennessee et al. 2009) Gupta et al. 2018, strain JS14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.