STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EU78_16640Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)    
Predicted Functional Partners:
EU78_01760
Cobinamide phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
EU78_01765
cob(II)yrinic acid a,c-diamide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.993
EU78_16645
Cobalamin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.990
EU78_10440
Cobyrinic acid a,c-diamide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.949
EU78_16825
Acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.916
EU78_01750
Cobalamin biosynthesis protein CobQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.910
EU78_01755
cobalt-precorrin-6X reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.891
EU78_16635
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.854
EU78_16855
Cobalamin biosynthesis protein CobD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.853
EU78_01770
Precorrin-4 C11-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.813
Your Current Organism:
Mycolicibacterium rufum
NCBI taxonomy Id: 318424
Other names: CIP 109273, JCM 16372, M. rufum, Mycobacterium rufum, Mycobacterium rufum Hennessee et al. 2009, Mycobacterium sp. JS14, Mycolicibacterium rufum (Hennessee et al. 2009) Gupta et al. 2018, strain JS14
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